EnhancerDB
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  3. rs143958669[chr12:46888638]
Enhancers that have rs143958669[chr12:46888638]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 46872285 46895935 enh14678
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Lung Stomach Placenta Colon (HCT116) Uterus Peripheral Blood (MM.1S) Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Heart
Transcript factors that have rs143958669[chr12:46888638]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 46888023 46888673 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21542057
chr12 46888023 46888673 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108027614
chr12 46888070 46888694 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21542058
chr12 46888070 46888694 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108027615
chr12 46888070 46888911 TCF7L2 UCSC Txn Factor no Conserved 108027616
chr12 46888115 46888711 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21542061
chr12 46888115 46888711 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108027619
chr12 46888281 46888661 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21542078
chr12 46888281 46888661 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108027645
chr12 46888315 46888911 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21542084
chr12 46888315 46888911 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108027654
chr12 46888519 46888980 ZNF274 GTRD no Liver (HepG2) 21542086
chr12 46888519 46888980 ZNF274 GTRD no Liver (HepG2) 108027658
chr12 46888582 46888927 ZNF274 GTRD no Liver (HepG2) 21542087
chr12 46888636 46888642 LEF1 TRANSFAC yes 120629678
chr12 46888636 46888642 SOX10 JASPAR yes 120629679
Genes associated with rs143958669[chr12:46888638], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More