EnhancerDB
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  3. rs144572025[chr1:19757216]
Enhancers that have rs144572025[chr1:19757216]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs144572025[chr1:19757216]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19757209 19757220 GCM1 JASPAR yes 27189202
chr1 19757210 19757220 GCM2 JASPAR yes 27189203
chr1 19757213 19757222 ZEB1 JASPAR yes 27189204
chr1 19757214 19757224 ID4 JASPAR yes 27189205
chr1 19757214 19757224 NHLH1 JASPAR yes 27189206
chr1 19757214 19757224 TCF3 JASPAR yes 27189207
chr1 19757214 19757224 TCF4 JASPAR yes 27189208
chr1 19757215 19757224 SNAI2 JASPAR yes 27189209
chr1 19757216 19757221 USF2 TRANSFAC yes 27189210
Genes associated with rs144572025[chr1:19757216], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More