EnhancerDB
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  3. rs144590939[chr6:88423617]
Enhancers that have rs144590939[chr6:88423617]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 88422133 88444375 enh23401
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs144590939[chr6:88423617]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 88423600 88423621 IRF1 JASPAR yes 103323384
chr6 88423605 88423620 MEF2A JASPAR yes 103323386
chr6 88423606 88423621 FOXP1 JASPAR yes 103323387
chr6 88423606 88423621 MEF2C JASPAR yes 103323388
chr6 88423606 88423627 IRF1 JASPAR yes 103323389
chr6 88423607 88423619 FOXC2 JASPAR yes 103323390
chr6 88423607 88423619 MEF2A JASPAR yes 103323391
chr6 88423607 88423619 MEF2B JASPAR yes 103323392
chr6 88423607 88423619 MEF2D JASPAR yes 103323393
chr6 88423608 88423618 MEF2A JASPAR yes 103323394
chr6 88423610 88423622 IRF1 JASPAR yes 103323396
chr6 88423610 88423624 IRF7 JASPAR yes 103323397
chr6 88423612 88423627 FOXP1 JASPAR yes 103323398
chr6 88423613 88423625 FOXC2 JASPAR yes 103323399
chr6 88423615 88423619 YY1 TRANSFAC yes 103323400
Genes associated with rs144590939[chr6:88423617], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More