EnhancerDB
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  3. rs148465672[chr17:55540413]
Enhancers that have rs148465672[chr17:55540413]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55530146 55569915 enh4488
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs148465672[chr17:55540413]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55539307 55541179 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773526
chr17 55539307 55541179 POLR2A UCSC Txn Factor no Conserved 108274069
chr17 55539307 55541179 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274070
chr17 55540178 55540742 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773527
chr17 55540178 55540742 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274071
chr17 55540218 55541376 ZBTB33 GTRD no Lung (A549) 21773528
chr17 55540218 55541376 ZBTB33 GTRD no Lung (A549) 108274072
chr17 55540274 55541310 ZBTB33 GTRD no Lung (A549) 21773529
chr17 55540274 55541310 ZBTB33 GTRD no Lung (A549) 108274073
chr17 55540287 55540787 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773530
chr17 55540287 55540787 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274074
chr17 55540289 55541366 ZBTB33 GTRD no Lung (A549) 21773531
chr17 55540289 55541366 ZBTB33 GTRD no Lung (A549) 108274075
chr17 55540322 55541084 ZBTB33 GTRD no Lung (A549) 21773532
chr17 55540322 55541084 ZBTB33 GTRD no Lung (A549) 108274076
chr17 55540328 55541147 ZBTB33 GTRD no Lung (A549) 21773533
chr17 55540328 55541147 ZBTB33 GTRD no Lung (A549) 108274077
chr17 55540384 55541332 ZBTB33 GTRD no Lung (A549) 21773534
chr17 55540384 55541332 ZBTB33 GTRD no Lung (A549) 108274078
chr17 55540389 55541167 ZBTB33 GTRD no Lung (A549) 21773535
chr17 55540389 55541167 ZBTB33 GTRD no Lung (A549) 108274079
chr17 55540397 55540413 RFX2 JASPAR yes 54957405
chr17 55540397 55540413 RFX3 JASPAR yes 54957406
chr17 55540397 55540413 RFX4 JASPAR yes 54957407
chr17 55540397 55540413 RFX5 JASPAR yes 54957408
chr17 55540412 55541121 ZBTB33 GTRD no Brain (SK-N-SH) 21773536
chr17 55540412 55541121 ZBTB33 GTRD no Brain (SK-N-SH) 108274080
chr17 55540413 55540615 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773537
chr17 55540413 55540615 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274081
Genes associated with rs148465672[chr17:55540413], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More