EnhancerDB
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  3. rs1562788[chr3:150065903]
Enhancers that have rs1562788[chr3:150065903]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 150057777 150071992 enh21028
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs1562788[chr3:150065903]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 150065893 150065905 PKNOX1 JASPAR yes 6565885
chr3 150065893 150065905 PKNOX2 JASPAR yes 6565886
chr3 150065893 150065905 TGIF1 JASPAR yes 6565887
chr3 150065893 150065905 TGIF2 JASPAR yes 6565888
chr3 150065894 150065904 MSC JASPAR yes 6565889
chr3 150065894 150065904 TFAP4 JASPAR yes 6565890
chr3 150065898 150065912 GATA2 JASPAR yes 6565891
chr3 150065900 150065906 GATA1 TRANSFAC yes 6565892
chr3 150065900 150065908 GATA5 JASPAR yes 6565893
Genes associated with rs1562788[chr3:150065903], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More