EnhancerDB
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  3. rs1570488[chr6:16683930]
Enhancers that have rs1570488[chr6:16683930]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 16667585 16734115 enh23080
Liver Astrocyte Colon (HCT116) Adrenal Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs1570488[chr6:16683930]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 16683875 16684391 TFAP2C UCSC Txn Factor no Conserved 108538894
chr6 16683913 16683931 RARA JASPAR yes 100326905
chr6 16683917 16683931 RXRB JASPAR yes 100326906
chr6 16683917 16683931 RXRG JASPAR yes 100326907
chr6 16683917 16683932 LEF1 JASPAR yes 100326908
chr6 16683918 16683932 TCF7L2 JASPAR yes 100326910
Genes associated with rs1570488[chr6:16683930], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More