EnhancerDB
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  3. rs1626232[chr12:125220568]
Enhancers that have rs1626232[chr12:125220568]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs1626232[chr12:125220568]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125220118 125220850 ZNF143 GTRD no Epithelial (MCF-7) 21582469
chr12 125220174 125220933 SOX2 GTRD no Neural Stem Cells (H9) 21582470
chr12 125220180 125221384 ZNF274 GTRD no Cervix (HeLa-S3) 21582471
chr12 125220189 125220788 ZNF143 GTRD no Epithelial (MCF-7) 21582472
chr12 125220191 125220930 SOX2 GTRD no Neural Stem Cells (H9) 21582473
chr12 125220193 125221099 TCF7L2 GTRD no Colon (HCT116) 21582474
chr12 125220206 125220767 ZNF143 GTRD no Epithelial (MCF-7) 21582475
chr12 125220227 125220787 SOX2 GTRD no Neural Stem Cells (H9) 21582476
chr12 125220236 125220981 SOX2 GTRD no Neural Stem Cells (H9) 21582477
chr12 125220249 125221157 ZNF143 GTRD no Epithelial (MCF-7) 21582478
chr12 125220270 125220927 SOX2 GTRD no Neural Stem Cells (H9) 21582479
chr12 125220279 125220966 TCF7L2 GTRD no Colon (HCT116) 21582480
chr12 125220332 125220856 ZNF143 GTRD no Epithelial (MCF-7) 21582481
chr12 125220348 125220863 ZNF143 GTRD no Epithelial (MCF-7) 21582482
chr12 125220391 125220874 TCF7L2 GTRD no Colon (HCT116) 21582483
chr12 125220482 125221133 ZNF274 GTRD no Bone Marrow (K562) 21582484
chr12 125220482 125221151 ZNF274 GTRD no Bone Marrow (K562) 21582485
chr12 125220559 125220574 ZIC4 JASPAR yes 124415440
chr12 125220562 125220578 ZNF143 JASPAR yes 124415441
Genes associated with rs1626232[chr12:125220568], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More