EnhancerDB
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  3. rs1672904[chr12:125221912]
Enhancers that have rs1672904[chr12:125221912]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs1672904[chr12:125221912]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125221450 125222046 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21582497
chr12 125221450 125222046 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108069699
chr12 125221597 125221973 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21582498
chr12 125221597 125221973 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108069700
chr12 125221668 125221932 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21582500
chr12 125221668 125221932 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108069702
chr12 125221905 125221921 SOX4 JASPAR yes 124415619
Genes associated with rs1672904[chr12:125221912], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More