EnhancerDB
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  3. rs1672905[chr12:125221717]
Enhancers that have rs1672905[chr12:125221717]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr12 125221717 125221873 vista15330
VISTA
Transcript factors that have rs1672905[chr12:125221717]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125221450 125222046 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21582497
chr12 125221450 125222046 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108069699
chr12 125221597 125221973 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21582498
chr12 125221597 125221973 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108069700
chr12 125221667 125221907 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21582499
chr12 125221667 125221907 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108069701
chr12 125221668 125221932 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21582500
chr12 125221668 125221932 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108069702
chr12 125221714 125221727 ZBTB18 JASPAR yes 82497779
chr12 125221714 125221727 ZBTB18 JASPAR yes 124415579
Genes associated with rs1672905[chr12:125221717], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More