EnhancerDB
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  3. rs16825863[chr1:39630919]
Enhancers that have rs16825863[chr1:39630919]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39628825 39647095 enh11760
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Liver Stomach Muscle (A673) Placenta Thyroid Uterus Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Neural Stem Cells (H9) Heart
chr1 39629409 39631707 vista40
VISTA
Transcript factors that have rs16825863[chr1:39630919]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39630911 39630919 MEIS2 JASPAR yes 28261126
chr1 39630911 39630919 MEIS3 JASPAR yes 28261127
chr1 39630911 39630919 MEIS2 JASPAR yes 71129161
chr1 39630911 39630919 MEIS3 JASPAR yes 71129162
chr1 39630912 39630923 CDX2 JASPAR yes 28261129
chr1 39630912 39630923 CDX2 JASPAR yes 71129164
chr1 39630913 39630924 HOXA10 JASPAR yes 28261130
chr1 39630913 39630924 HOXC11 JASPAR yes 28261131
chr1 39630913 39630924 HOXC12 JASPAR yes 28261132
chr1 39630913 39630924 HOXA10 JASPAR yes 71129165
chr1 39630913 39630924 HOXC11 JASPAR yes 71129166
chr1 39630913 39630924 HOXC12 JASPAR yes 71129167
chr1 39630914 39630923 CDX1 JASPAR yes 28261133
chr1 39630914 39630923 CDX1 JASPAR yes 71129168
chr1 39630914 39630924 HOXC10 JASPAR yes 28261134
chr1 39630914 39630924 HOXD11 JASPAR yes 28261135
chr1 39630914 39630924 HOXD13 JASPAR yes 28261136
chr1 39630914 39630924 HOXC10 JASPAR yes 71129169
chr1 39630914 39630924 HOXD11 JASPAR yes 71129170
chr1 39630914 39630924 HOXD13 JASPAR yes 71129171
Genes associated with rs16825863[chr1:39630919], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More