EnhancerDB
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  3. rs16852058[chr1:16204665]
Enhancers that have rs16852058[chr1:16204665]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16203705 16215635 enh81
Bone Marrow (K562) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs16852058[chr1:16204665]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16204564 16209335 TCF7L2 GTRD no Colon (HCT116) 21325255
chr1 16204564 16209335 TCF7L2 GTRD no Colon (HCT116) 107802203
chr1 16204661 16204670 PITX3 JASPAR yes 27009464
chr1 16204661 16204671 GSC2 JASPAR yes 27009465
chr1 16204661 16204671 GSC JASPAR yes 27009466
chr1 16204662 16204670 OTX1 JASPAR yes 27009467
chr1 16204662 16204670 OTX2 JASPAR yes 27009468
chr1 16204662 16204670 RHOXF1 JASPAR yes 27009469
Genes associated with rs16852058[chr1:16204665], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More