EnhancerDB
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  3. rs16862798[chr1:19777837]
Enhancers that have rs16862798[chr1:19777837]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs16862798[chr1:19777837]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19777819 19777840 IRF1 JASPAR yes 27192124
chr1 19777823 19777837 STAT1 JASPAR yes 27192125
chr1 19777823 19777838 STAT2 JASPAR yes 27192126
chr1 19777836 19777850 GATA2 JASPAR yes 27192130
chr1 19777836 19777850 TCF7L2 JASPAR yes 27192131
chr1 19777836 19777851 LEF1 JASPAR yes 27192132
Genes associated with rs16862798[chr1:19777837], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More