EnhancerDB
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  3. rs1704391[chr15:42204258]
Enhancers that have rs1704391[chr15:42204258]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 42202285 42235244 enh3549
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs1704391[chr15:42204258]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 42204248 42204259 USF2 JASPAR yes 23004004
chr15 42204249 42204259 SREBF1 JASPAR yes 23004006
chr15 42204249 42204259 SREBF2 JASPAR yes 23004007
chr15 42204249 42204259 TFEC JASPAR yes 23004008
Genes associated with rs1704391[chr15:42204258], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr15 42140345 42186275 - SPTBN5 ENSG00000137877.8 42186275 17983 Liver 3.95285e-05 13846