EnhancerDB
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  3. rs17644596[chr1:171393826]
Enhancers that have rs17644596[chr1:171393826]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs17644596[chr1:171393826]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171392976 171394439 ZNF143 GTRD no Epithelial (MCF-7) 21349627
chr1 171392990 171394373 ZNF143 GTRD no Epithelial (MCF-7) 21349628
chr1 171393268 171394511 ZNF143 GTRD no Epithelial (MCF-7) 21349629
chr1 171393422 171394291 ZNF143 GTRD no Epithelial (MCF-7) 21349630
chr1 171393471 171394189 ZNF143 GTRD no Epithelial (MCF-7) 21349631
chr1 171393484 171394361 ZNF143 GTRD no Epithelial (MCF-7) 21349632
chr1 171393524 171394434 ZNF143 GTRD no Epithelial (MCF-7) 21349633
chr1 171393530 171394190 ZNF143 GTRD no Epithelial (MCF-7) 21349634
chr1 171393560 171394280 ZNF143 GTRD no Epithelial (MCF-7) 21349635
chr1 171393612 171394182 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21349636
chr1 171393637 171394107 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21349637
chr1 171393812 171394217 ZNF143 GTRD no Epithelial (MCF-7) 21349638
chr1 171393814 171393834 ESR1 JASPAR yes 33079020
chr1 171393817 171393835 ESR2 JASPAR yes 33079021
chr1 171393819 171393834 ESR2 JASPAR yes 33079022
chr1 171393819 171393839 ESR1 JASPAR yes 33079023
Genes associated with rs17644596[chr1:171393826], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More