EnhancerDB
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  3. rs180802540[chr6:47217533]
Enhancers that have rs180802540[chr6:47217533]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 47202205 47219001 enh9147
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs180802540[chr6:47217533]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 47217533 47217541 LMX1A JASPAR yes 102015356
chr6 47217533 47217541 LMX1B JASPAR yes 102015357
chr6 47217533 47217541 NKX6-1 JASPAR yes 102015358
chr6 47217533 47217541 NKX6-2 JASPAR yes 102015359
chr6 47217533 47217541 VAX1 JASPAR yes 102015360
chr6 47217533 47217541 VAX2 JASPAR yes 102015361
chr6 47217533 47217541 VSX1 JASPAR yes 102015362
chr6 47217533 47217541 VSX2 JASPAR yes 102015363
Genes associated with rs180802540[chr6:47217533], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More