EnhancerDB
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  3. rs180910407[chr1:39654512]
Enhancers that have rs180910407[chr1:39654512]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39647111 39665522 enh11761
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs180910407[chr1:39654512]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39654506 39654516 SREBF2 JASPAR yes 28264685
chr1 39654506 39654517 USF1 JASPAR yes 28264686
chr1 39654506 39654517 USF2 JASPAR yes 28264687
chr1 39654509 39654522 NFKB1 JASPAR yes 28264688
Genes associated with rs180910407[chr1:39654512], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More