EnhancerDB
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  3. rs1861639[chr12:109062198]
Enhancers that have rs1861639[chr12:109062198]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 109055765 109067015 enh2584
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs1861639[chr12:109062198]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109062181 109062199 IRF2 JASPAR yes 123610975
chr12 109062182 109062203 IRF1 JASPAR yes 123610976
chr12 109062183 109062198 SOX21 JASPAR yes 123610977
chr12 109062184 109062199 STAT2 JASPAR yes 123610978
chr12 109062185 109062199 SPI1 JASPAR yes 123610979
chr12 109062186 109062198 YY1 JASPAR yes 123610980
chr12 109062188 109062203 MEF2C JASPAR yes 123610981
chr12 109062197 109062201 YY1 TRANSFAC yes 123610983
Genes associated with rs1861639[chr12:109062198], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 108908962 108919614 + FICD ENSG00000198855.2 108908962 142584 Heart 0.173348 12497