EnhancerDB
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  3. rs186341001[chr17:41483758]
Enhancers that have rs186341001[chr17:41483758]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 41479046 41498765 enh17167
Brain (SK-N-MC) Astrocyte Uterus Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs186341001[chr17:41483758]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 41483477 41483983 SOX2 GTRD no Neural Stem Cells (H9) 21760115
chr17 41483537 41483845 SOX2 GTRD no Neural Stem Cells (H9) 21760116
chr17 41483754 41483775 IRF1 JASPAR yes 54342845
chr17 41483758 41483773 IRF9 JASPAR yes 54342846
Genes associated with rs186341001[chr17:41483758], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More