EnhancerDB
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  3. rs187209564[chr17:2798099]
Enhancers that have rs187209564[chr17:2798099]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 2744850 2808324 enh4213
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs187209564[chr17:2798099]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 2795210 2800120 ZNF143 GTRD no Epithelial (MCF-7) 21739739
chr17 2795210 2800120 ZNF143 GTRD no Epithelial (MCF-7) 108231314
chr17 2795895 2799236 TCF7L2 GTRD no Colon (HCT116) 21739754
chr17 2795895 2799236 TCF7L2 GTRD no Colon (HCT116) 108231342
chr17 2798088 2798105 RARA JASPAR yes 52783624
chr17 2798089 2798104 LEF1 JASPAR yes 52783625
chr17 2798090 2798104 TCF7L2 JASPAR yes 52783626
Genes associated with rs187209564[chr17:2798099], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More