EnhancerDB
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Enhancers that have rs188385581[chr17:55629142]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55607567 55641035 enh4490
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Blood (GM12878) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr17 55628691 55629280 vista25238
VISTA
Transcript factors that have rs188385581[chr17:55629142]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55628821 55629201 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773614
chr17 55628821 55629201 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274165
chr17 55628834 55629178 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773617
chr17 55628834 55629178 RUNX3 UCSC Txn Factor no Conserved 108274168
chr17 55628834 55629178 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274169
chr17 55628838 55629248 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773619
chr17 55628838 55629248 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274171
chr17 55628897 55629175 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773627
chr17 55628897 55629175 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274179
chr17 55628911 55629507 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773628
chr17 55628911 55629507 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274180
chr17 55628912 55629222 POU2F2 UCSC Txn Factor no Conserved 108274181
chr17 55628933 55629193 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274183
chr17 55628976 55629186 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773631
chr17 55628976 55629186 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274185
chr17 55629142 55629150 NR4A2 JASPAR yes 21259975
chr17 55629142 55629150 NR4A2 JASPAR yes 54968426
Genes associated with rs188385581[chr17:55629142], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More