EnhancerDB
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  3. rs188404873[chr1:27780272]
Enhancers that have rs188404873[chr1:27780272]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27742945 27784244 enh174
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs188404873[chr1:27780272]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27780258 27780278 TP63 JASPAR yes 27696294
chr1 27780259 27780277 TP53 JASPAR yes 27696295
chr1 27780259 27780277 TP73 JASPAR yes 27696296
chr1 27780266 27780278 HES5 JASPAR yes 27696297
chr1 27780266 27780278 HES7 JASPAR yes 27696298
chr1 27780266 27780278 PKNOX2 JASPAR yes 27696299
chr1 27780266 27780282 T JASPAR yes 27696300
chr1 27780269 27780288 PITX2 TRANSFAC yes 27696301
Genes associated with rs188404873[chr1:27780272], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More