EnhancerDB
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  3. rs188930956[chr12:125209566]
Enhancers that have rs188930956[chr12:125209566]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs188930956[chr12:125209566]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125208691 125209750 ZNF143 GTRD no Epithelial (MCF-7) 21582342
chr12 125208837 125209656 TCF7L2 GTRD no Colon (HCT116) 21582345
chr12 125209175 125209638 TCF7L2 GTRD no Colon (HCT116) 21582346
chr12 125209226 125209732 ZNF274 GTRD no Blood (GM12878) 21582347
chr12 125209329 125209857 ZNF274 GTRD no Blood (GM12878) 21582348
chr12 125209375 125209780 ZNF274 GTRD no Blood (GM12878) 21582349
chr12 125209403 125209883 SOX2 GTRD no Neural Stem Cells (H9) 21582350
chr12 125209410 125209725 ZNF274 GTRD no Blood (GM12878) 21582351
chr12 125209557 125209572 NR2C2 JASPAR yes 124413885
chr12 125209563 125209568 SP1 TRANSFAC yes 124413886
chr12 125209566 125209580 PLAG1 JASPAR yes 124413887
Genes associated with rs188930956[chr12:125209566], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More