EnhancerDB
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  3. rs188936658[chr1:39602682]
Enhancers that have rs188936658[chr1:39602682]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs188936658[chr1:39602682]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39602668 39602682 RORA JASPAR yes 28256553
chr1 39602676 39602691 FOXA1 JASPAR yes 28256554
chr1 39602678 39602690 FOXC2 JASPAR yes 28256555
chr1 39602679 39602690 FOXB1 JASPAR yes 28256556
chr1 39602679 39602690 FOXC1 JASPAR yes 28256557
chr1 39602680 39602684 YY1 TRANSFAC yes 28256558
chr1 39602680 39602694 SPIC JASPAR yes 28256559
Genes associated with rs188936658[chr1:39602682], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More