EnhancerDB
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  3. rs188955806[chr12:52518586]
Enhancers that have rs188955806[chr12:52518586]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52508085 52522855 enh2356
Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Spleen Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs188955806[chr12:52518586]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52513207 52519034 P63 GTRD no Skin (Keratinocyte) 21546171
chr12 52518275 52519891 AR GTRD no Prostate (PC-3) 21546230
chr12 52518581 52518592 HOXC11 JASPAR yes 120919367
chr12 52518581 52518592 HOXC12 JASPAR yes 120919368
chr12 52518581 52518592 HOXD12 JASPAR yes 120919369
chr12 52518582 52518592 HOXC10 JASPAR yes 120919370
chr12 52518582 52518592 HOXD11 JASPAR yes 120919371
chr12 52518582 52518596 NR2F1 JASPAR yes 120919372
Genes associated with rs188955806[chr12:52518586], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More