EnhancerDB
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  3. rs189499889[chr1:16205076]
Enhancers that have rs189499889[chr1:16205076]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16203705 16215635 enh81
Bone Marrow (K562) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs189499889[chr1:16205076]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16204564 16209335 TCF7L2 GTRD no Colon (HCT116) 21325255
chr1 16204564 16209335 TCF7L2 GTRD no Colon (HCT116) 107802203
chr1 16205067 16205077 HOXB13 JASPAR yes 27009551
chr1 16205070 16205083 DUXA JASPAR yes 27009554
chr1 16205071 16205082 DUX4 JASPAR yes 27009555
chr1 16205071 16205082 PHOX2A JASPAR yes 27009556
chr1 16205071 16205082 PROP1 JASPAR yes 27009557
chr1 16205073 16205083 POU6F2 JASPAR yes 27009558
chr1 16205074 16205084 GSX1 JASPAR yes 27009559
chr1 16205074 16205084 GSX2 JASPAR yes 27009560
chr1 16205074 16205084 LHX2 JASPAR yes 27009561
chr1 16205074 16205084 MEOX1 JASPAR yes 27009562
chr1 16205074 16205084 MEOX2 JASPAR yes 27009563
chr1 16205074 16205084 MNX1 JASPAR yes 27009564
chr1 16205074 16205086 MEF2A JASPAR yes 27009565
chr1 16205074 16205086 MEF2B JASPAR yes 27009566
chr1 16205074 16205086 MEF2D JASPAR yes 27009567
chr1 16205075 16205083 LBX1 JASPAR yes 27009568
chr1 16205075 16205083 PDX1 JASPAR yes 27009569
chr1 16205075 16205083 VAX1 JASPAR yes 27009570
chr1 16205075 16205083 VAX2 JASPAR yes 27009571
chr1 16205075 16205083 VSX1 JASPAR yes 27009572
chr1 16205075 16205083 VSX2 JASPAR yes 27009573
chr1 16205075 16205085 MEF2A JASPAR yes 27009574
Genes associated with rs189499889[chr1:16205076], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More