EnhancerDB
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  3. rs189850644[chr1:230276267]
Enhancers that have rs189850644[chr1:230276267]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230237385 230313644 enh12770
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs189850644[chr1:230276267]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230276258 230276277 RFX2 JASPAR yes 36025563
chr1 230276262 230276278 RFX2 JASPAR yes 36025564
chr1 230276262 230276278 RFX3 JASPAR yes 36025565
chr1 230276262 230276278 RFX4 JASPAR yes 36025566
chr1 230276262 230276278 RFX5 JASPAR yes 36025567
Genes associated with rs189850644[chr1:230276267], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 229456758 229479041 - CCSAP ENSG00000154429.6 229479041 797226 Liver 0.0117792 1931