EnhancerDB
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Enhancers that have rs190400309[chr17:62161539]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62157225 62175223 enh17290
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr17 62161129 62161576 vista25505
VISTA
Transcript factors that have rs190400309[chr17:62161539]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62159832 62166447 ZNF143 GTRD no Epithelial (MCF-7) 21778613
chr17 62159832 62166447 ZNF143 GTRD no Epithelial (MCF-7) 108282222
chr17 62160289 62166431 ZNF143 GTRD no Epithelial (MCF-7) 21778614
chr17 62160289 62166431 ZNF143 GTRD no Epithelial (MCF-7) 108282223
chr17 62160339 62166409 ZNF143 GTRD no Epithelial (MCF-7) 21778615
chr17 62160339 62166409 ZNF143 GTRD no Epithelial (MCF-7) 108282224
chr17 62161146 62161610 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21778622
chr17 62161146 62161610 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108282231
chr17 62161268 62167143 ZNF143 GTRD no Epithelial (MCF-7) 21778623
chr17 62161268 62167143 ZNF143 GTRD no Epithelial (MCF-7) 108282232
chr17 62161284 62161814 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21778624
chr17 62161284 62161814 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108282233
chr17 62161286 62161802 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21778625
chr17 62161286 62161802 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108282234
chr17 62161353 62161597 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108282235
chr17 62161416 62161810 ZBTB33 GTRD no Brain (SK-N-SH) 108282236
chr17 62161420 62161684 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21778626
chr17 62161420 62161684 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108282237
chr17 62161441 62162335 ZNF143 GTRD no Epithelial (MCF-7) 21778627
chr17 62161441 62162335 ZNF143 GTRD no Epithelial (MCF-7) 108282238
chr17 62161516 62161691 ZNF274 GTRD no Bone Marrow (K562) 108282239
Genes associated with rs190400309[chr17:62161539], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More