EnhancerDB
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  3. rs190409211[chr1:171402338]
Enhancers that have rs190409211[chr1:171402338]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs190409211[chr1:171402338]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171402327 171402340 SMAD2 JASPAR yes 33080234
chr1 171402330 171402340 TBR1 JASPAR yes 33080235
chr1 171402331 171402341 TBX21 JASPAR yes 33080236
chr1 171402332 171402340 MGA JASPAR yes 33080237
chr1 171402332 171402340 TBX15 JASPAR yes 33080238
chr1 171402332 171402340 TBX1 JASPAR yes 33080239
chr1 171402332 171402340 TBX4 JASPAR yes 33080240
chr1 171402332 171402340 TBX5 JASPAR yes 33080241
chr1 171402332 171402341 ZEB1 JASPAR yes 33080242
chr1 171402332 171402344 PKNOX1 JASPAR yes 33080243
chr1 171402332 171402344 PKNOX2 JASPAR yes 33080244
chr1 171402332 171402344 TGIF1 JASPAR yes 33080245
chr1 171402333 171402343 FIGLA JASPAR yes 33080246
chr1 171402333 171402343 ID4 JASPAR yes 33080247
chr1 171402333 171402343 TCF3 JASPAR yes 33080248
chr1 171402333 171402343 TCF4 JASPAR yes 33080249
chr1 171402334 171402343 SNAI2 JASPAR yes 33080250
chr1 171402335 171402340 USF2 TRANSFAC yes 33080251
Genes associated with rs190409211[chr1:171402338], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More