EnhancerDB
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  3. rs190898488[chr2:232548221]
Enhancers that have rs190898488[chr2:232548221]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 232518645 232563095 enh6202
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr2 232548018 232548333 vista35177
VISTA
Transcript factors that have rs190898488[chr2:232548221]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 232548206 232548226 RREB1 JASPAR yes 22230169
chr2 232548206 232548226 RREB1 JASPAR yes 81736177
chr2 232548211 232548231 RREB1 JASPAR yes 22230170
chr2 232548211 232548231 RREB1 JASPAR yes 81736178
chr2 232548216 232548226 SP1 JASPAR yes 22230172
chr2 232548216 232548226 SP1 JASPAR yes 81736180
chr2 232548217 232548225 SP1 TRANSFAC yes 22230173
chr2 232548217 232548225 SP1 TRANSFAC yes 81736181
chr2 232548217 232548226 SP1 TRANSFAC yes 22230174
chr2 232548217 232548226 SP1 TRANSFAC yes 81736182
chr2 232548218 232548223 SP1 TRANSFAC yes 22230175
chr2 232548218 232548223 SP1 TRANSFAC yes 81736183
chr2 232548219 232548224 SP1 TRANSFAC yes 22230176
chr2 232548219 232548224 SP1 TRANSFAC yes 81736184
chr2 232548219 232548225 SP1 TRANSFAC yes 22230177
chr2 232548219 232548225 SP1 TRANSFAC yes 81736185
chr2 232548221 232548231 SP1 JASPAR yes 22230178
chr2 232548221 232548231 SP1 JASPAR yes 81736186
Genes associated with rs190898488[chr2:232548221], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More