EnhancerDB
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  3. rs192220374[chr1:19798123]
Enhancers that have rs192220374[chr1:19798123]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs192220374[chr1:19798123]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19798109 19798124 ZIC3 JASPAR yes 27195165
chr1 19798110 19798124 GLIS3 JASPAR yes 27195166
chr1 19798117 19798132 NR2C2 JASPAR yes 27195167
chr1 19798119 19798139 ESR1 JASPAR yes 27195168
chr1 19798120 19798124 ESR1 TRANSFAC yes 27195169
Genes associated with rs192220374[chr1:19798123], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More