EnhancerDB
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  3. rs2004793[chr12:125245922]
Enhancers that have rs2004793[chr12:125245922]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs2004793[chr12:125245922]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125245169 125245943 TCF7L2 GTRD no Colon (HCT116) 21582882
chr12 125245177 125245992 TCF7L2 GTRD no Colon (HCT116) 21582883
chr12 125245626 125246002 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582884
chr12 125245882 125247075 AR GTRD no Prostate (PC-3) 21582885
chr12 125245882 125247075 AR GTRD no Prostate (PC-3) 108069860
chr12 125245912 125245922 HOXA13 JASPAR yes 124418955
chr12 125245912 125245927 MEF2C JASPAR yes 124418956
chr12 125245913 125245927 POU4F1 JASPAR yes 124418957
chr12 125245913 125245928 MEF2A JASPAR yes 124418958
chr12 125245914 125245926 MEF2D JASPAR yes 124418959
Genes associated with rs2004793[chr12:125245922], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More