EnhancerDB
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  3. rs200922247[chr1:39859942]
Enhancers that have rs200922247[chr1:39859942]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39853990 39867590 enh11763
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs200922247[chr1:39859942]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39859930 39859942 PBX1 JASPAR yes 28272921
chr1 39859931 39859945 ONECUT2 JASPAR yes 28272922
chr1 39859931 39859945 ONECUT3 JASPAR yes 28272923
chr1 39859934 39859946 PBX1 JASPAR yes 28272924
chr1 39859935 39859949 ONECUT2 JASPAR yes 28272925
chr1 39859935 39859949 ONECUT3 JASPAR yes 28272926
chr1 39859938 39859950 PBX1 JASPAR yes 28272927
chr1 39859939 39859952 DUXA JASPAR yes 28272928
chr1 39859939 39859953 ONECUT1 JASPAR yes 28272929
chr1 39859939 39859953 ONECUT2 JASPAR yes 28272930
chr1 39859939 39859953 ONECUT3 JASPAR yes 28272931
chr1 39859940 39859950 PAX3 JASPAR yes 28272932
chr1 39859940 39859950 PAX7 JASPAR yes 28272933
chr1 39859940 39859951 DUX4 JASPAR yes 28272934
Genes associated with rs200922247[chr1:39859942], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More