EnhancerDB
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  3. rs2010172[chr19:2550206]
Enhancers that have rs2010172[chr19:2550206]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 2549602 2550221 vista28233
VISTA
Transcript factors that have rs2010172[chr19:2550206]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2549419 2550424 ZNF274 GTRD no Blood (GM12878) 108362402
chr19 2549623 2550230 ZNF274 GTRD no Blood (GM12878) 108362408
chr19 2549894 2551536 TCF7L2 GTRD no Colon (HCT116) 21837099
chr19 2549894 2551536 TCF7L2 GTRD no Colon (HCT116) 108362410
chr19 2550042 2551338 TCF7L2 GTRD no Colon (HCT116) 21837100
chr19 2550042 2551338 TCF7L2 GTRD no Colon (HCT116) 108362411
chr19 2550074 2551502 TCF7L2 GTRD no Colon (HCT116) 21837101
chr19 2550074 2551502 TCF7L2 GTRD no Colon (HCT116) 108362412
chr19 2550082 2550304 ZNF274 GTRD no Blood (GM12878) 108362413
chr19 2550197 2550211 ZIC1 JASPAR yes 70783996
chr19 2550197 2550211 ZIC1 JASPAR yes 112073346
chr19 2550197 2550212 ZIC4 JASPAR yes 70783997
chr19 2550197 2550212 ZIC4 JASPAR yes 112073347
chr19 2550198 2550211 TFAP2A JASPAR yes 70783998
chr19 2550198 2550211 TFAP2A JASPAR yes 112073348
Genes associated with rs2010172[chr19:2550206], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More