EnhancerDB
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  3. rs201259379[chr12:125199031]
Enhancers that have rs201259379[chr12:125199031]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs201259379[chr12:125199031]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125198057 125199373 TCF7L2 GTRD no Colon (HCT116) 21582177
chr12 125198057 125199373 TCF7L2 GTRD no Colon (HCT116) 108069555
chr12 125198057 125199373 TCF7L2 GTRD no Colon (HCT116) 108069556
chr12 125198389 125199204 ZNF274 GTRD no Cervix (HeLa-S3) 21582205
chr12 125198389 125199204 ZNF274 GTRD no Cervix (HeLa-S3) 108069591
chr12 125198520 125199101 ZNF274 GTRD no Bone Marrow (K562) 21582210
chr12 125198520 125199101 ZNF274 GTRD no Bone Marrow (K562) 108069596
chr12 125198628 125199130 ZNF143 GTRD no Epithelial (MCF-7) 21582212
chr12 125198706 125199213 ZBTB33 GTRD no Lung (A549) 21582217
chr12 125199017 125199032 FOXP1 JASPAR yes 124412431
chr12 125199017 125199037 RREB1 JASPAR yes 124412432
chr12 125199017 125199038 IRF1 JASPAR yes 124412433
chr12 125199019 125199039 RREB1 JASPAR yes 124412434
chr12 125199021 125199036 STAT2 JASPAR yes 124412435
chr12 125199022 125199034 IRF1 JASPAR yes 124412436
chr12 125199022 125199037 FOXP1 JASPAR yes 124412437
chr12 125199024 125199044 RREB1 JASPAR yes 124412438
chr12 125199026 125199046 RREB1 JASPAR yes 124412439
chr12 125199028 125199048 RREB1 JASPAR yes 124412440
chr12 125199029 125199035 HiNF-A TRANSFAC yes 124412441
chr12 125199030 125199050 RREB1 JASPAR yes 124412442
Genes associated with rs201259379[chr12:125199031], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More