EnhancerDB
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  3. rs201562296[chr12:109112540]
Enhancers that have rs201562296[chr12:109112540]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 109103554 109121615 enh14974
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Stomach Skin (Keratinocyte) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs201562296[chr12:109112540]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109112527 109112541 IRF7 JASPAR yes 123616061
chr12 109112534 109112549 FOXP1 JASPAR yes 123616062
chr12 109112536 109112541 ETS2 TRANSFAC yes 123616063
chr12 109112536 109112551 FOXP1 JASPAR yes 123616064
chr12 109112536 109112557 IRF1 JASPAR yes 123616065
chr12 109112539 109112550 FOXP2 JASPAR yes 123616066
chr12 109112540 109112555 STAT2 JASPAR yes 123616067
Genes associated with rs201562296[chr12:109112540], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More