EnhancerDB
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  3. rs201683478[chr5:148945392]
Enhancers that have rs201683478[chr5:148945392]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 148937365 148947295 enh8790
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs201683478[chr5:148945392]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 148945386 148945407 IRF1 JASPAR yes 66825062
chr5 148945387 148945408 IRF1 JASPAR yes 66825063
chr5 148945389 148945410 IRF1 JASPAR yes 66825064
chr5 148945390 148945411 IRF1 JASPAR yes 66825065
chr5 148945391 148945406 FOXP1 JASPAR yes 66825066
chr5 148945391 148945412 IRF1 JASPAR yes 66825067
chr5 148945392 148945407 FOXP1 JASPAR yes 66825068
chr5 148945392 148945413 IRF1 JASPAR yes 66825069
Genes associated with rs201683478[chr5:148945392], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More