EnhancerDB
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  3. rs2027178[chr1:39600845]
Enhancers that have rs2027178[chr1:39600845]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs2027178[chr1:39600845]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39600838 39600853 FOXP1 JASPAR yes 28256261
chr1 39600839 39600851 FOXC2 JASPAR yes 28256262
chr1 39600841 39600845 YY1 TRANSFAC yes 28256263
chr1 39600845 39600850 GATA2 JASPAR yes 28256264
Genes associated with rs2027178[chr1:39600845], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More