EnhancerDB
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  3. rs2090254[chr1:235105660]
Enhancers that have rs2090254[chr1:235105660]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235087405 235127975 enh996
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs2090254[chr1:235105660]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235103649 235106148 ZNF274 GTRD no Bone Marrow (K562) 21401777
chr1 235103649 235106148 ZNF274 GTRD no Bone Marrow (K562) 107884750
chr1 235103696 235109375 ZNF274 GTRD no Blood (GM12878) 21401778
chr1 235103696 235109375 ZNF274 GTRD no Blood (GM12878) 107884753
chr1 235103696 235109375 ZNF274 GTRD no Blood (GM12878) 107884754
chr1 235103696 235109375 ZNF274 GTRD no Blood (GM12878) 107884755
chr1 235103696 235109375 ZNF274 GTRD no Blood (GM12878) 107884756
chr1 235103696 235109375 ZNF274 GTRD no Blood (GM12878) 107884757
chr1 235103717 235106131 ZNF274 GTRD no Blood (GM12878) 21401780
chr1 235103717 235106131 ZNF274 GTRD no Blood (GM12878) 107884759
chr1 235103734 235108753 ZNF274 GTRD no Blood (GM12878) 21401781
chr1 235103734 235108753 ZNF274 GTRD no Blood (GM12878) 107884761
chr1 235103734 235108753 ZNF274 GTRD no Blood (GM12878) 107884762
chr1 235103734 235108753 ZNF274 GTRD no Blood (GM12878) 107884763
chr1 235103734 235108753 ZNF274 GTRD no Blood (GM12878) 107884764
chr1 235103760 235108578 ZNF274 GTRD no Liver (HepG2) 21401785
chr1 235103760 235108578 ZNF274 GTRD no Liver (HepG2) 107884768
chr1 235103760 235108578 ZNF274 GTRD no Liver (HepG2) 107884769
chr1 235103760 235108578 ZNF274 GTRD no Liver (HepG2) 107884770
chr1 235103760 235108578 ZNF274 GTRD no Liver (HepG2) 107884771
chr1 235103773 235106132 ZNF274 GTRD no Blood (GM12878) 21401786
chr1 235103773 235106132 ZNF274 GTRD no Blood (GM12878) 107884772
chr1 235103821 235108569 ZBTB33 GTRD no Lung (A549) 107884778
chr1 235103821 235108569 ZBTB33 GTRD no Lung (A549) 107884779
chr1 235103821 235108569 ZBTB33 GTRD no Lung (A549) 107884780
chr1 235103821 235108569 ZBTB33 GTRD no Lung (A549) 107884781
chr1 235103823 235106186 ZNF274 GTRD no Blood (GM12878) 21401792
chr1 235103823 235106186 ZNF274 GTRD no Blood (GM12878) 107884782
chr1 235103841 235105994 ZNF274 GTRD no Blood (GM12878) 21401793
chr1 235103841 235105994 ZNF274 GTRD no Blood (GM12878) 107884784
chr1 235103849 235105676 ZNF274 GTRD no Bone Marrow (K562) 21401794
chr1 235103849 235105676 ZNF274 GTRD no Bone Marrow (K562) 107884785
chr1 235103861 235106216 ZNF274 GTRD no Bone Marrow (K562) 21401796
chr1 235103861 235106216 ZNF274 GTRD no Bone Marrow (K562) 107884787
chr1 235103864 235105660 ZNF274 GTRD no Blood (GM12878) 21401797
chr1 235103864 235105660 ZNF274 GTRD no Blood (GM12878) 107884788
chr1 235103914 235105660 ZNF274 GTRD no Blood (GM12878) 21401802
chr1 235103914 235105660 ZNF274 GTRD no Blood (GM12878) 107884794
chr1 235103932 235106157 ZNF274 GTRD no Blood (GM12878) 21401805
chr1 235103932 235106157 ZNF274 GTRD no Blood (GM12878) 107884797
chr1 235103942 235105687 ZNF274 GTRD no Bone Marrow (K562) 21401806
chr1 235103942 235105687 ZNF274 GTRD no Bone Marrow (K562) 107884798
chr1 235104002 235105698 ZNF274 GTRD no Blood (GM12878) 21401822
chr1 235104002 235105698 ZNF274 GTRD no Blood (GM12878) 107884805
chr1 235104051 235105696 ZNF274 GTRD no Blood (GM12878) 21401834
chr1 235104051 235105696 ZNF274 GTRD no Blood (GM12878) 107884809
chr1 235104052 235105738 ZNF274 GTRD no Blood (GM12878) 21401835
chr1 235104052 235105738 ZNF274 GTRD no Blood (GM12878) 107884810
chr1 235104072 235105757 ZNF274 GTRD no Blood (GM12878) 21401839
chr1 235104072 235105757 ZNF274 GTRD no Blood (GM12878) 107884813
chr1 235104132 235105684 ZNF274 GTRD no Blood (GM12878) 21401869
chr1 235104132 235105684 ZNF274 GTRD no Blood (GM12878) 107884823
chr1 235104164 235106266 ZNF274 GTRD no Blood (GM12878) 21401890
chr1 235104164 235106266 ZNF274 GTRD no Blood (GM12878) 107884829
chr1 235104574 235105784 ZNF274 GTRD no Blood (GM12878) 21401932
chr1 235104574 235105784 ZNF274 GTRD no Blood (GM12878) 107884836
chr1 235104652 235105704 ZNF274 GTRD no Blood (GM12878) 21401934
chr1 235104652 235105704 ZNF274 GTRD no Blood (GM12878) 107884838
chr1 235104677 235105712 ZNF274 GTRD no Blood (GM12878) 21401936
chr1 235104677 235105712 ZNF274 GTRD no Blood (GM12878) 107884840
chr1 235104842 235105698 ZNF274 GTRD no Blood (GM12878) 21401945
chr1 235104842 235105698 ZNF274 GTRD no Blood (GM12878) 107884849
chr1 235105084 235106032 ZNF274 GTRD no Blood (GM12878) 21401955
chr1 235105084 235106032 ZNF274 GTRD no Blood (GM12878) 107884859
chr1 235105219 235105815 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21401957
chr1 235105357 235105873 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21401959
chr1 235105450 235105780 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21401960
chr1 235105618 235106047 ZNF274 GTRD no Blood (GM12878) 21401961
chr1 235105646 235105665 PAX5 JASPAR yes 36336280
Genes associated with rs2090254[chr1:235105660], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More