EnhancerDB
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  3. rs228746[chr17:42173752]
Enhancers that have rs228746[chr17:42173752]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 42170662 42193575 enh17179
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs228746[chr17:42173752]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 42172907 42173854 POLR2A UCSC Txn Factor no Conserved 108261860
chr17 42172907 42173854 POLR2A UCSC Txn Factor no Conserved 108261861
chr17 42173188 42173764 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21761844
chr17 42173188 42173764 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108261939
chr17 42173197 42173847 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21761846
chr17 42173197 42173847 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108261941
chr17 42173253 42173793 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108261949
chr17 42173287 42173763 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21761854
chr17 42173287 42173763 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108261953
chr17 42173301 42173791 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108261954
chr17 42173519 42173783 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21761868
chr17 42173519 42173783 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108261973
chr17 42173538 42173778 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108261974
Genes associated with rs228746[chr17:42173752], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 42154114 42201070 - HDAC5 ENSG00000108840.11 42201070 0 Esophagus 1.23195e-11 15914
chr17 42112003 42144987 - LSM12 ENSG00000161654.5 42144987 28765 Thyroid 0.00353883 15912