EnhancerDB
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  3. rs2290098[chr5:173209031]
Enhancers that have rs2290098[chr5:173209031]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 173178093 173268555 enh8886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr5 173208911 173209406 vista50235
VISTA
Transcript factors that have rs2290098[chr5:173209031]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 173208875 173209721 TCF7L2 UCSC Txn Factor no Conserved 108537608
chr5 173208966 173210085 GATA2 UCSC Txn Factor no Conserved 108537609
chr5 173209021 173209032 PROP1 JASPAR yes 67904410
chr5 173209021 173209032 PROP1 JASPAR yes 70766913
chr5 173209022 173209034 MEF2A JASPAR yes 67904411
chr5 173209022 173209034 MEF2A JASPAR yes 70766914
chr5 173209026 173209037 DUX4 JASPAR yes 67904412
chr5 173209026 173209037 PHOX2A JASPAR yes 67904413
chr5 173209026 173209037 PROP1 JASPAR yes 67904414
chr5 173209026 173209037 DUX4 JASPAR yes 70766915
chr5 173209026 173209037 PHOX2A JASPAR yes 70766916
chr5 173209026 173209037 PROP1 JASPAR yes 70766917
Genes associated with rs2290098[chr5:173209031], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More