EnhancerDB
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  3. rs233956[chr16:4332858]
Enhancers that have rs233956[chr16:4332858]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 4330820 4352135 enh16514
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs233956[chr16:4332858]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 4331935 4333290 TCF7L2 GTRD no Colon (HCT116) 21686278
chr16 4331940 4333630 ZNF143 GTRD no Epithelial (MCF-7) 21686279
chr16 4331940 4333886 ZNF143 GTRD no Epithelial (MCF-7) 21686280
chr16 4332022 4333423 TCF7L2 GTRD no Colon (HCT116) 21686281
chr16 4332646 4333439 TCF7L2 GTRD no Colon (HCT116) 21686284
chr16 4332741 4333235 TCF7L2 GTRD no Colon (HCT116) 21686285
chr16 4332856 4332877 IRF1 JASPAR yes 9265882
chr16 4332857 4332878 IRF1 JASPAR yes 9265883
chr16 4332858 4332879 IRF1 JASPAR yes 9265884
Genes associated with rs233956[chr16:4332858], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More