EnhancerDB
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  3. rs2412652[chr15:42207016]
Enhancers that have rs2412652[chr15:42207016]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 42202285 42235244 enh3549
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs2412652[chr15:42207016]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 42207009 42207028 PAX5 JASPAR yes 23004391
chr15 42207015 42207021 SOX10 JASPAR yes 23004392
Genes associated with rs2412652[chr15:42207016], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr15 41785591 41795747 + ITPKA ENSG00000137825.6 41785591 411269 Ovary 0.110563 13836