EnhancerDB
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  3. rs252497[chr16:29159564]
Enhancers that have rs252497[chr16:29159564]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 29150646 29173335 enh16623
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Ovary Esophagus Astrocyte Blood (T-cell) Lung (A549) Stomach Placenta Uterus Lung (PC-9) Breast Muscle (Myotube) Neural Stem Cells (H9) Thymus Heart
chr16 29159118 29159675 vista22319
VISTA
Transcript factors that have rs252497[chr16:29159564]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 29159549 29159564 ZIC4 JASPAR yes 10245159
chr16 29159549 29159564 ZIC4 JASPAR yes 49363355
chr16 29159551 29159564 TFAP2A JASPAR yes 10245163
chr16 29159551 29159564 TFAP2B JASPAR yes 10245164
chr16 29159551 29159564 TFAP2C JASPAR yes 10245165
chr16 29159551 29159564 TFAP2A JASPAR yes 49363359
chr16 29159551 29159564 TFAP2B JASPAR yes 49363360
chr16 29159551 29159564 TFAP2C JASPAR yes 49363361
chr16 29159563 29159576 TFAP2A JASPAR yes 10245166
chr16 29159563 29159576 TFAP2B JASPAR yes 10245167
chr16 29159563 29159576 TFAP2C JASPAR yes 10245168
chr16 29159563 29159576 TFAP2A JASPAR yes 49363362
chr16 29159563 29159576 TFAP2B JASPAR yes 49363363
chr16 29159563 29159576 TFAP2C JASPAR yes 49363364
chr16 29159564 29159575 EBF1 JASPAR yes 10245169
chr16 29159564 29159575 EBF1 JASPAR yes 49363365
Genes associated with rs252497[chr16:29159564], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More