EnhancerDB
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  3. rs2533879[chr7:2859847]
Enhancers that have rs2533879[chr7:2859847]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr7 2838125 2881021 enh23934
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs2533879[chr7:2859847]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr7 2859842 2859850 SMAD4 TRANSFAC yes 12562421
chr7 2859844 2859849 SP1 TRANSFAC yes 12562422
chr7 2859845 2859856 TFAP2A JASPAR yes 12562423
chr7 2859845 2859856 TFAP2B JASPAR yes 12562424
chr7 2859845 2859856 TFAP2C JASPAR yes 12562425
chr7 2859846 2859855 TFAP2A JASPAR yes 12562426
Genes associated with rs2533879[chr7:2859847], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr7 2767746 2883958 - GNA12 ENSG00000146535.9 2883958 0 Esophagus 6.6552e-10 7181