EnhancerDB
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Enhancers that have rs2638519[chr12:53267299]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53249369 53285465 enh14733
Bone Marrow (K562) Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs2638519[chr12:53267299]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53266838 53269794 ZNF143 GTRD no Epithelial (MCF-7) 21547696
chr12 53266838 53269794 ZNF143 GTRD no Epithelial (MCF-7) 108034458
chr12 53266838 53269794 ZNF143 GTRD no Epithelial (MCF-7) 108034459
chr12 53266945 53270088 ZNF143 GTRD no Epithelial (MCF-7) 21547698
chr12 53266945 53270088 ZNF143 GTRD no Epithelial (MCF-7) 108034461
chr12 53266945 53270088 ZNF143 GTRD no Epithelial (MCF-7) 108034462
chr12 53267138 53270034 ZNF274 GTRD no Blood (GM12878) 108034463
chr12 53267154 53268123 ZNF274 GTRD no Blood (GM12878) 108034464
chr12 53267160 53267821 ZNF274 GTRD no Bone Marrow (K562) 21547699
chr12 53267160 53267821 ZNF274 GTRD no Bone Marrow (K562) 108034465
chr12 53267173 53269386 ZNF274 GTRD no Bone Marrow (K562) 21547700
chr12 53267173 53269386 ZNF274 GTRD no Bone Marrow (K562) 108034466
chr12 53267184 53269590 ZNF274 GTRD no Bone Marrow (K562) 21547701
chr12 53267184 53269590 ZNF274 GTRD no Bone Marrow (K562) 108034467
chr12 53267186 53269818 ZNF143 GTRD no Epithelial (MCF-7) 21547702
chr12 53267186 53269818 ZNF143 GTRD no Epithelial (MCF-7) 108034468
chr12 53267193 53269341 ZBTB33 GTRD no Lung (A549) 21547703
chr12 53267193 53269341 ZBTB33 GTRD no Lung (A549) 108034469
chr12 53267226 53267767 ZNF274 GTRD no Bone Marrow (K562) 21547704
chr12 53267237 53268762 ZNF274 GTRD no Bone Marrow (K562) 21547705
chr12 53267237 53268762 ZNF274 GTRD no Bone Marrow (K562) 108034470
chr12 53267245 53267806 ZNF274 GTRD no Blood (GM12878) 108034471
chr12 53267261 53269398 ZNF274 GTRD no Blood (GM12878) 108034472
chr12 53267289 53267307 RARA JASPAR yes 120957571
Genes associated with rs2638519[chr12:53267299], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More