EnhancerDB
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  3. rs28372194[chr1:235159162]
Enhancers that have rs28372194[chr1:235159162]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs28372194[chr1:235159162]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235158589 235159213 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403203
chr1 235158589 235159213 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885647
chr1 235158737 235159167 ZNF274 GTRD no Liver (HepG2) 21403205
chr1 235158737 235159167 ZNF274 GTRD no Liver (HepG2) 107885649
chr1 235158741 235159193 ZNF274 GTRD no Liver (HepG2) 21403206
chr1 235158741 235159193 ZNF274 GTRD no Liver (HepG2) 107885650
chr1 235158826 235159239 ZNF274 GTRD no Liver (HepG2) 21403207
chr1 235159086 235159676 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403208
chr1 235159118 235159528 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403209
chr1 235159138 235159442 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403210
chr1 235159141 235159519 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403211
chr1 235159157 235159577 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403212
chr1 235159159 235159173 PLAG1 JASPAR yes 36343756
chr1 235159160 235159174 EBF1 JASPAR yes 36343757
chr1 235159161 235159174 TFAP2A JASPAR yes 36343758
chr1 235159161 235159174 TFAP2B JASPAR yes 36343759
chr1 235159161 235159174 TFAP2C JASPAR yes 36343760
chr1 235159161 235159176 TFAP2A JASPAR yes 36343761
chr1 235159161 235159176 TFAP2C JASPAR yes 36343762
chr1 235159162 235159171 TFAP2A JASPAR yes 36343763
chr1 235159162 235159173 EBF1 JASPAR yes 36343764
Genes associated with rs28372194[chr1:235159162], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More