EnhancerDB
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  3. rs28400365[chr16:85242468]
Enhancers that have rs28400365[chr16:85242468]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28400365[chr16:85242468]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85240143 85242565 TCF7L2 GTRD no Colon (HCT116) 21721156
chr16 85241608 85242808 TCF7L2 GTRD no Colon (HCT116) 21721175
chr16 85241666 85242790 ZNF143 GTRD no Epithelial (MCF-7) 21721176
chr16 85241683 85242768 TCF7L2 GTRD no Colon (HCT116) 21721177
chr16 85241684 85242667 TCF7L2 GTRD no Colon (HCT116) 21721179
chr16 85241781 85242762 ZNF143 GTRD no Epithelial (MCF-7) 21721180
chr16 85241813 85242752 ZNF143 GTRD no Epithelial (MCF-7) 21721181
chr16 85241830 85242676 TCF7L2 GTRD no Colon (HCT116) 21721182
chr16 85242160 85243044 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21721183
chr16 85242172 85242597 ZNF274 GTRD no Bone Marrow (K562) 21721184
chr16 85242207 85242782 TCF7L2 GTRD no Colon (HCT116) 21721185
chr16 85242253 85242508 ZNF274 GTRD no Liver (HepG2) 21721186
chr16 85242293 85242643 ZNF274 GTRD no Bone Marrow (K562) 21721187
chr16 85242330 85242746 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21721188
chr16 85242386 85242762 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21721189
chr16 85242408 85242848 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21721190
chr16 85242464 85242476 TAL1 JASPAR yes 12032867
chr16 85242465 85242477 BHLHE23 JASPAR yes 12032868
chr16 85242466 85242476 BHLHE22 JASPAR yes 12032869
chr16 85242466 85242476 NEUROD2 JASPAR yes 12032870
chr16 85242466 85242476 NEUROG2 JASPAR yes 12032871
chr16 85242466 85242476 OLIG1 JASPAR yes 12032872
chr16 85242466 85242476 OLIG2 JASPAR yes 12032873
chr16 85242466 85242476 OLIG3 JASPAR yes 12032874
chr16 85242466 85242478 TAL1 JASPAR yes 12032875
Genes associated with rs28400365[chr16:85242468], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More