EnhancerDB
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  3. rs28424234[chr1:235132990]
Enhancers that have rs28424234[chr1:235132990]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs28424234[chr1:235132990]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235132676 235133137 SOX2 GTRD no Neural Stem Cells (H9) 21402816
chr1 235132676 235133137 SOX2 GTRD no Neural Stem Cells (H9) 107885441
chr1 235132825 235133421 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21402817
chr1 235132825 235133421 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107885442
chr1 235132825 235133439 TCF7L2 UCSC Txn Factor no Conserved 107885443
chr1 235132832 235133492 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402818
chr1 235132832 235133492 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885444
chr1 235132853 235133383 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402819
chr1 235132853 235133383 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885445
chr1 235132881 235133218 SOX2 GTRD no Neural Stem Cells (H9) 21402820
chr1 235132881 235133218 SOX2 GTRD no Neural Stem Cells (H9) 107885446
chr1 235132889 235134652 POLR2A UCSC Txn Factor no Conserved 107885447
chr1 235132889 235134652 POLR2A UCSC Txn Factor no Conserved 107885448
chr1 235132896 235133546 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402821
chr1 235132896 235133546 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885449
chr1 235132901 235133441 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107885450
chr1 235132912 235133296 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402822
chr1 235132912 235133296 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885451
chr1 235132916 235133400 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107885452
chr1 235132917 235133433 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402823
chr1 235132917 235133433 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885453
chr1 235132931 235133407 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402824
chr1 235132931 235133407 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885454
chr1 235132934 235133510 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402825
chr1 235132934 235133510 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885455
chr1 235132935 235133405 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21402826
chr1 235132935 235133405 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107885456
chr1 235132935 235133439 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402827
chr1 235132935 235133439 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885457
chr1 235132935 235133471 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107885458
chr1 235132938 235133458 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107885459
chr1 235132940 235133544 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402828
chr1 235132940 235133544 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885460
chr1 235132949 235133305 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21402829
chr1 235132949 235133305 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107885461
chr1 235132962 235133446 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107885462
chr1 235132963 235133333 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402830
chr1 235132963 235133333 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885463
chr1 235132963 235133370 E2F1 UCSC Txn Factor no Conserved 107885464
chr1 235132963 235133414 NR3C1 UCSC Txn Factor no Conserved 107885465
chr1 235132965 235133345 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402831
chr1 235132965 235133345 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885466
chr1 235132966 235133370 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21402832
chr1 235132966 235133370 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107885467
chr1 235132986 235133001 NR2C2 JASPAR yes 36339976
chr1 235132987 235133297 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21402833
chr1 235132987 235133297 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107885468
chr1 235132987 235133706 EP300 UCSC Txn Factor no Conserved 107885469
chr1 235132989 235133435 TCF12 UCSC Txn Factor no Conserved 107885470
chr1 235132989 235133435 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107885471
Genes associated with rs28424234[chr1:235132990], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More