EnhancerDB
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  3. rs28427204[chr1:226860647]
Enhancers that have rs28427204[chr1:226860647]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28427204[chr1:226860647]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226860634 226860649 STAT1 JASPAR yes 35831037
chr1 226860636 226860647 STAT1 JASPAR yes 35831038
chr1 226860639 226860651 HNF1B JASPAR yes 35831039
chr1 226860640 226860648 HOXA5 JASPAR yes 35831040
chr1 226860641 226860651 EMX1 JASPAR yes 35831041
chr1 226860641 226860651 EMX2 JASPAR yes 35831042
chr1 226860641 226860651 ESX1 JASPAR yes 35831043
chr1 226860641 226860651 EVX1 JASPAR yes 35831044
chr1 226860641 226860651 EVX2 JASPAR yes 35831045
chr1 226860641 226860651 GBX1 JASPAR yes 35831046
chr1 226860641 226860651 GBX2 JASPAR yes 35831047
chr1 226860641 226860651 GSX1 JASPAR yes 35831048
chr1 226860641 226860651 GSX2 JASPAR yes 35831049
chr1 226860641 226860651 HESX1 JASPAR yes 35831050
chr1 226860641 226860651 HOXA2 JASPAR yes 35831051
chr1 226860641 226860651 HOXB2 JASPAR yes 35831052
chr1 226860641 226860651 HOXB3 JASPAR yes 35831053
chr1 226860641 226860651 LHX2 JASPAR yes 35831054
chr1 226860641 226860651 LHX6 JASPAR yes 35831055
chr1 226860641 226860651 MEOX1 JASPAR yes 35831056
chr1 226860641 226860651 MEOX2 JASPAR yes 35831057
chr1 226860641 226860651 MIXL1 JASPAR yes 35831058
chr1 226860641 226860651 MNX1 JASPAR yes 35831059
chr1 226860641 226860651 POU6F1 JASPAR yes 35831060
chr1 226860641 226860651 RAX JASPAR yes 35831061
chr1 226860641 226860652 HOXA10 JASPAR yes 35831062
chr1 226860642 226860650 LMX1A JASPAR yes 35831063
chr1 226860642 226860650 LMX1B JASPAR yes 35831064
chr1 226860642 226860650 NKX6-1 JASPAR yes 35831065
chr1 226860642 226860650 NKX6-2 JASPAR yes 35831066
chr1 226860642 226860650 PDX1 JASPAR yes 35831067
chr1 226860642 226860650 VAX1 JASPAR yes 35831068
chr1 226860642 226860650 VAX2 JASPAR yes 35831069
chr1 226860642 226860650 VSX1 JASPAR yes 35831070
chr1 226860642 226860658 POU4F2 JASPAR yes 35831071
chr1 226860647 226860650 MYB TRANSFAC yes 35831072
Genes associated with rs28427204[chr1:226860647], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More