EnhancerDB
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  3. rs28478744[chr5:172314038]
Enhancers that have rs28478744[chr5:172314038]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172258805 172341224 enh22817
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr5 172313877 172314602 vista50192
VISTA
Transcript factors that have rs28478744[chr5:172314038]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172313976 172314396 MYC UCSC Txn Factor no Conserved 108537528
chr5 172314027 172314307 CEBPB UCSC Txn Factor no Conserved 108537529
chr5 172314029 172314043 RXRB JASPAR yes 67839598
chr5 172314029 172314043 RXRG JASPAR yes 67839599
chr5 172314029 172314043 RXRB JASPAR yes 70764565
chr5 172314029 172314043 RXRG JASPAR yes 70764566
chr5 172314029 172314044 LEF1 JASPAR yes 67839600
chr5 172314029 172314044 LEF1 JASPAR yes 70764567
chr5 172314030 172314044 TCF7L2 JASPAR yes 67839601
chr5 172314030 172314044 TCF7L2 JASPAR yes 70764568
Genes associated with rs28478744[chr5:172314038], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More